Audio dropped due to sync issue

[kungfoo]

While playing with options on a simple light/dark test, I discovered that the audio cut out halfway through the video.  Upon further inspection, I noticed that the logs were indicating a sync issue.  I verified that the problem exists with 3 audio options:
--audio-codec MP3
--audio-codec faac
--save-raw-audio

The specific command-line was:
$ avidemux_cli --load in.mov --save-raw-video --save out.avi --save-raw-audio
...
[ODML]write dummy chunk at file position 235492 with data size 131072
[getPacket]  [PerfectAudio]Warning skew of 32000 us
  [getPacket]  [PerfectAudio]Warning target=32000 current=0
  [getPacket]  [PerfectAudio]Warning skew of 64000 us
  [getPacket]  [PerfectAudio]Warning target=64000 current=0
  [getPacket]  [PerfectAudio]Warning skew of 96000 us
  [getPacket]  [PerfectAudio]Warning target=96000 current=0
  [getPacket]  Audio packet in the past, dropping
  [getPacket]  [PerfectAudio]Warning skew of 96000 us
  [getPacket]  [PerfectAudio]Warning target=96000 current=0
  [getPacket]  Audio packet in the past, dropping
...
It continues to drop audio packets until the end of the file.

The only mention in the internet seems to be the source file: ttp://tinyurl.com/m3zjj9z

The original video, encoded video, as well as the log can be found at:
http://tinyurl.com/jwvfmqr

Has anyone seen this issue before?